Publications -- Computational Ecology

Books:

• Templates for the Solution of Linear Systems: Building Blocks for Iterative Methods, SIAM Publication, Philadelphia, 1994, ISBN: 0-89871-328-5.
  
  
• Understanding Search Engines: Mathematical Modeling and Text Retrieval by M.W. Berry and M. Browne, SIAM Book Series: Software, Environments, and Tools, Second Edition (May 2005), ISBN: 0-89871-581-4.
  
  
• Computational Information Retrieval, Proceedings of CIR'00, SIAM Proceedings in Applied Mathematics, M. Berry (Ed.), SIAM, Philadelphia, 2001, ISBN: 0-89871-500-8, 185 p.
  
  
• Survey of Text Mining: Clustering, Classification, and Retrieval, M. Berry (Ed.), Springer-Verlag, New York, 2003, ISBN: 0-387-95563-1, 270 p.
  
  
• Lecture Notes in Data Mining, M.W. Berry and M. Browne (Eds.), World Scientific, Singapore, 2006, ISBN: 981-256-802-6, 230p; Scientia (Fall 2007)
  
  
• Survey of Text Mining II: Clustering, Classification, and Retrieval, M.W Berry and M. Castellanos (Eds.), Springer, London, 2008, ISBN: 978-1-84800-045-2, 240 p.
  
  
• Text Mining: Applications and Theory, M.W Berry and J. Kogan (Eds.), Wiley, West Sussex, 2010, ISBN: 978-0-470074982-1, 224p.
  
  
• High-Performance Scientific Computing, M.W. Berry, K.A. Gallivan, E. Gallopoulos, A. Grama, B. Philippe, Y. Saad, and F. Saied (Eds.) Springer, London, 2012, ISBN: 978-1-4471-2436-81, 346p.
  
  

Recent publications:

Computational Ecology

• ut-cs-94-238 -- The Land-Use Change Analysis System (LUCAS) for Evaluating Landscape Management Decisions. Michael W. Berry, Richard O. Flamm, Brett C. Hazen, and Rhonda M. MacIntyre, July 1994. Also appears as Lucas: A System for Modeling Land-Use Change in IEEE Computational Science & Engineering 3:1 (1996), pp. 24-35.

• ut-cs-94-262 -- Parallel Models of Animal Migration in Northern Yellowstone National Park. Ember Uziel and Michael W. Berry, November 1994. Published in International Journal of Supercomputer Applications and High Performance Computing 9:4 (1996), pp. 237-255.

• ut-cs-94-266 -- The Design of the Land-Use Change Analysis System (LUCAS): Part I - Graphical User Interface. R. L. MacIntyre, B. C. Hazen, and M. W. Berry, December 1994.

• ut-cs-95-298 -- The Design of the Land-Use Change Analysis System (LUCAS): Part II - Parallel and Distributed Implementation. B. C. Hazen and M. W. Berry, August 1995. Published as The Simulation of Land-Cover Change Using a Distributed Computing Environment in Simulation Practice and Theory5:6 (1997), pp. 489-514.

• (HTML) ut-cs-95-298 -- The Design of the Land-Use Change Analysis System (LUCAS): Part II - Parallel and Distributed Implementation. B. C. Hazen and M. W. Berry, August 1995.

• ut-cs-95-296 -- Computational Models of White-Tailed Deer in the Florida Everglades. C. A. Abbott, M. W. Berry, E. J. Comiskey, J. C. Dempsey, L. J. Gross, and H.-K. Luh, August 1995. Published in IEEE Computational Science and Engineering 4:4, (1997).

• (HTML) ut-cs-95-296 -- Computational Models of White-Tailed Deer in the Florida Everglades. C. A. Abbott, M. W. Berry, E. J. Comiskey, J. C. Dempsey, L. J. Gross, and H.-K. Luh, August 1995. Published in IEEE Computational Science and Engineering 4:4, (1997).

• (Postscript) ut-cs-97-356 -- Distributed Land-Cover Change Simulation Using Using PVM and MPI. M. W. Berry, and K. S. Minser, February 1997.

• Parallelization in a Spatially Explicit Individual-Based Model - 1. Spatial Data Interpolation, H.-K. Luh, C. A. Abbott, M. W. Berry, E. J. Comiskey, J. C. Dempsey, and L. J. Gross, Computers & Geosciences 23:3, (1997), pp. 293-304.

• (HTML) ut-cs-97-356 -- Distributed Land-Cover Change Simulation Using Using PVM and MPI. M. W. Berry, and K. S. Minser, February 1997. Submitted to the Land Use Modeling Workshop, USGS EROS Data Center, Sioux Falls, SD, June 5-6, 1997.

• (PDF, Postscript) -- Signal-Transfer Modeling for Regional Assessment of Forest Responses to Enviromental and Land-Use Changes in the Southern United States. R.J. Luxmoore, W.W. Hargrove, M.L. Tharp, W.M. Post, M.W. Berry, K.S. Minser, W.P. Cropper, D.W. Johnson, B. Zeide, R.L. Amateis, H.E. Burkhart, V.C. Baldwin, and K.D. Peterson, Environmental Modeling & Assessment 5 (2000), pp. 125-137.

• (PDF) -- Higher Order Interpolation Using the Modified Shepard Method. M.W. Berry and K.S. Minser, ACM Transactions on Mathematical Software 25:3, (1999), pp. 353-366.

• (PDF) -- Addressing Multi-Use Issues in Sustainable Forest Management With Signal-Transfer Modeling, R.J. Luxmoore, W.W. Hargrove, M.L. Tharp, W.M. Post, M.W. Berry, K.S. Minser, W.P. Cropper, D.W. Johnson, B. Zeide, R.L. Amateis, H.E. Burkhart, V.C. Baldwin, and K.D. Peterson, Forest Ecology and Management 165 (2002), pp. 295-304.

• (PDF) -- Design and Implementation of a Parallel Fish Model for South Florida, D. Wang, E.A. Carr, L.J. Gross, and M.W. Berry, Proceedings of the Thirty-Seventh Hawaii International Conference on System Sciences (HICSS-37), Jan 5-8, Big Island, Hawaii (2004).

• (RTF) -- Analyzing Land-Use Change at Different Scales in Central Georgia, V.H. Dale, D. Druckenbrod, L. Baskaran, C. Garten,L. Olsen, R. Efroymson, and R. Washington-Allen, M. Aldridge, M. Berry, Proceedings of the 4th Southern Forestry and Natural Resource GIS conference. Athens, Georgia, Dec 16-18, 2004, in press.

• (HTML,PDF) -- A Parallel Implementation of ALFISH: Simulating Hydrological Compartmentalization Effects on Fish Dynamics in the Florida Everglades, A. Immanuel, M.W. Berry, L.J. Gross, M. Palmer, and D. Wang, Simulation Practice and Theory 13:1 (2005), pp. 55-76.

• (PDF) -- A Grid Service Module for Natural Resource Management, D. Wang, E. Carr, M. Palmer, M.W. Berry, and L.J. Gross, IEEE Internet Computing 9:1(2005), pp. 35-41.

• (PDF) -- Vehicle Impacts on the Environment at Different Spatial Scales: Observations in West Central Georgia, USA, V. Dale, D. Druckenbrod, L. Baskaran, M. Aldridge, M. Berry, C. Garten, L. Olsen, R. Efroymson, and R. Washingto-Allen, in Journal of Terramechanics 42(2005), pp. 383-402.

• Planning Transboundary Ecological Risk Assessments at Military Installations, R.A. Efroymson, V.H. Dale, L.M. Baskaran, M.E. Chang, M.L. Aldridge, and M.W. Berry, Human and Ecological Risk Assessment 11, (2005), pp. 1193-1215.

• Bioregional Planning in Central Georgia, V. Dale, M. Aldridge, R. Auther, L. Baskaran, M. Berry, M. Chang, R. Efroymson, C. Garten, C. Stewart, and R. Washington-Allen, Futures 38(4), (2006), pp. 471-489.

• A Parallel Fish Landscape Model for Ecosystem Modeling, D. Wang, M.W. Berry, E.A. Carr, and L.J. Gross, Simulation: Simulation Transactions of the Society for Modeling and Simulation International 82(7), (2006), pp. 451-465.

• On Parallelization of a Spatially-Explicit Structured Ecological Model for Integrated Ecosystem Simulation, D. Wang, M.W. Berry, and L.J. Gross, International Journal of High Performance Computing Applications 20(4), (2006), pp. 571-581.
• Computational Science for Natural Resource Management, M.M. Fuller, D. Wang, L.J. Gross, and M.W. Berry Computing in Science & Engineering 9(4), (2007), pp. 40-48. [DOI link]
• Modeling the Effects of Land Use on the Quality of Water, Air, Noise, and Habitat for a Five-County Region in Georgia, V.H. Dale, F. Akhtar, M. Aldridge, L. Baskaran, M. Berry, M. Chang, R. Efroymson, C. Garten, E. Lingerfelt, and C. Stewart, Ecology and Society 13(1):10, (2008).
• A Framework of Integrating GIS and Parallel Computing for Spatial Control Problems - A Case Study of Wildfire Control, L. Yin, S.-L. Shaw, E. Carr, D. Wang, M.W. Berry, L.J. Gross, and J.Comiskey, International Journal of Geographical Information Science iFirst 2011, 1-21. [DOI Link]
• On Design of a Coupling Component for Parallel Multimodeling, D. Wang, M. Harmon, M.W. Berry, E. Carr, and L.J. Gross, International Journal of Modeling, Simulation, and Scientific Computing 2(4):445-458, 2011. [DOI Link]